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Semantic Web and Knowledge Exploration
Vinh Nguyen, Olivier Bodenreider, Todd Minning, Amit Sheth. The Knowledge Driven Exploration of Integrated Biomedical Knowledge Sources Facilitates the Generation of New Hypotheses. In 1st International Conference on Linked Science. Bonn, Germany: Linked Science workshop, ISWC; 2011.  (138.82 KB)
Semantic Web and SPARQL and Gene Ontology and Entrez Gene and path queries. and Data integration and Resource DescriptionFramework
Amit Sheth, Satya S. Sahoo, Olivier Bodenreider, Kelly Zeng. An experiment in integrating large biomedical knowledge resources with RDF: Application to associating genotype and phenotype information. In Workshop on Health Care and Life Sciences Data Integration for the Semantic Web at WWW2007; 2007.  (246.22 KB)
Singleton Property
Vinh Nguyen, Olivier Bodenreider, Amit Sheth. Don't like RDF Reification? Making Statements about Statements using Singleton Property. 23rd International conference on World Wide Web (WWW '14). New York, NY: ACM; 2014. p. 759-770.  (382.61 KB)
sparql
Vinh Nguyen, Olivier Bodenreider, Amit Sheth. Don't like RDF Reification? Making Statements about Statements using Singleton Property. 23rd International conference on World Wide Web (WWW '14). New York, NY: ACM; 2014. p. 759-770.  (382.61 KB)
text mining
Delroy Cameron, Pablo Mendes, Amit Sheth, Krishnaprasad Thirunarayan, Ramakanth Kavuluru, Olivier Bodenreider. Semantic Predications for Complex Information Needs in Biomedical Literature. 2011 IEEE International Conference on Bioinformatics and Biomedicine. Atlanta, GA: IEEE; 2011.
Delroy Cameron, Ramakanth Kavuluru, Olivier Bodenreider, Pablo Mendes, Amit Sheth, Krishnaprasad Thirunarayan. Semantic Predications for Complex Information Needs in Biomedical Literature. In 5th International Conference on Bioinformatics and Biomedicine (BIBM2011). Atlanta GA: 2011 IEEE International Conference on Bioinformatics and Biomedicine; 2011.  (471.3 KB)
we integrate gene and pathway information and show how three complex biological queries can be answered by the integrated knowledge base.
Satya Sahoo, Olivier Bodenreider, Joni Rutter, Karen Skinner, Amit Sheth. An Ontology-Driven Semantic Mashup of Gene and Biological Pathway Information: Application to the Domain of Nicotine Dependence. 2008 ;.

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